AME

Aquatic Microbial Ecology

AME is a hybrid research journal on all aspects of aquatic microbial dynamics, in particular viruses, prokaryotes and eukaryotes (planktonic and benthic, autotrophic and heterotrophic) in marine, freshwater and brackish habitats.

Online: ISSN 1616-1564

Print: ISSN 0948-3055

DOI: https://doi.org/10.3354/ame

Volume contents
Aquat Microb Ecol 15:225-231 (1998)

Quantification of catechol 2,3-dioxygenase gene homology and benzoate utilization in intertidal sediments

ABSTRACT: The catechol 2,3-dioxygenase (C23O) gene, xylE, from the TOL plasmid pathway was used to probe naturally occurring bacterial communities in an intertidal microbial mat. Bound probe was quantified by densitometric analysis of slot blots using colorimetric detection of hybridization between the probe and total DNA extracts from the sediments. The C23O gene encodes the key ring-breaking enzyme of the toluene degradation pathway, of which benzoate is an intermediate. Radiotracer experiments using 14C-benzoate detected benzoate mineralization in these sediments, corroborating the presence of both the genetic potential and in situ activity for this transformation.

KEYWORDS

Chris A. Francis (Co-author)

  • Marine Biology Research Division and Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California at San Diego, La Jolla, California 92093-0202, USA

Alisa Kirk Francis (Co-author)

  • Institute of Marine Sciences, University of California at Santa Cruz, Santa Cruz, California 95064, USA

Deborah S. Golet (Co-author)

  • Institute of Marine Sciences, University of California at Santa Cruz, Santa Cruz, California 95064, USA

Bess B. Ward (Co-author)

  • Institute of Marine Sciences, University of California at Santa Cruz, Santa Cruz, California 95064, USA