AME

Aquatic Microbial Ecology

AME is a hybrid research journal on all aspects of aquatic microbial dynamics, in particular viruses, prokaryotes and eukaryotes (planktonic and benthic, autotrophic and heterotrophic) in marine, freshwater and brackish habitats.

Online: ISSN 1616-1564

Print: ISSN 0948-3055

DOI: https://doi.org/10.3354/ame

Impact Factor1.1 (JCR 2025 release)

Article Acceptance Rate20% (2024)

Average Time in Review255 days (2024)

Total Annual Downloads243.813 (2025)

Volume contents
Aquat Microb Ecol 71:193-202 (2014)

Large-scale distribution of viruses in deep waters of the Pacific and Southern Oceans

ABSTRACT:

We examined the full-depth distributions of viruses at 38 stations along a cruise track of ~17000 km in the Southern Ocean and the central Pacific. In the layer between 200 and 2000 m, viral abundance decreased sharply with depth, and prokaryote abundance accounted for a large fraction (60%) of the variability in viral abundance. In contrast, in the deeper layer (>2000 m), the depth-dependent decrease in viral abundance was less evident, and the relationship between viral and prokaryote abundances was weak. Viral abundances were high in the Antarctic bottom water and tended to decrease along the paths of the Circumpolar Deep Water and the Pacific Deep Water. Outstanding peaks of virus-to-prokaryote abundance ratios (mean ± SE: 46 ± 1.2) were found in the bottom waters (depth >3500 m) of the subtropical regions, where sinking particle fluxes are known to be generally low. These results are interpreted as an indication that large-scale viral distribution patterns are generally, if not solely, influenced by transport mediated by the meridional overturning circulation, underscoring the necessity of future studies to clarify prevailing mode and mechanisms for viral production and decay in deep oceans, which appear to be largely distinct from those in upper oceans.

KEYWORDS

A NASA satellite image of the earth on a black background with sampling stations marked as white dots. A further image shows dot plots of viruses in green and prokaryotes in orange on a flow cytogram.

Left: Sampling stations (satellite image from NASA: http://oceancolor.gsfc.nasa.gov/cgi/biosphere_globes.pl). Right: Dot plots of viruses (green) and prokaryotes (orange) on flowcytogram. Illustration: C. Motegi.

Viruses are known to be ubiquitous and highly abundant in aquatic environments. However, in the deep oceanic water column, earth’s largest aquatic habitat, variation and control of viruses are still poorly understood. Yang and coworkers examined the full-depth distributions of viruses across oceanic basins along a cruise track of ~17,000 km in the Southern Ocean and the central Pacific. They found an outstanding feature in viral distribution pattern at depths greater than 2,000 m. Viral abundances were high in the Antarctic bottom water and tended to decrease along the path of the deep ocean circulation. Their results raised the possibility that large amounts of viruses could be slowly transported over considerable geographic distances in the deep ocean.

Yanhui Yang (Co-author)

  • Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8564, Japan
  • Center for Ecological Research, Kyoto University, Otsu, Shiga, 520-2113, Japan

Taichi Yokokawa (Co-author)

  • Center for Ecological Research, Kyoto University, Otsu, Shiga, 520-2113, Japan
  • Center for Marine Environmental Studies (CMES), Ehime University, Matsuyama, Ehime, 790-8577, Japan

Chiaki Motegi (Co-author)

  • Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8564, Japan
  • Center for Ecological Research, Kyoto University, Otsu, Shiga, 520-2113, Japan

Toshi Nagata (Co-author)

  • Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8564, Japan
  • Center for Ecological Research, Kyoto University, Otsu, Shiga, 520-2113, Japan