AME 64:267-273 (2011)  -  DOI: https://doi.org/10.3354/ame01527

Phylogenetic distance in Great Salt Lake microbial communities

J. Jacob Parnell1,*, Giovanni Rompato1, Todd A. Crowl2,5, Bart C. Weimer3, Michael E. Pfrender4

1Center for Integrated BioSystems and Department of Biology, and 2Department of Watershed Sciences and Ecology Center, Utah State University, Logan, Utah 84322, USA
3School of Veterinary Medicine, Department of Population Health and Reproduction, University of California at Davis, Davis, California 95616, USA
4Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
5Present address: National Science Foundation, Division of Environmental Biology, Arlington, Virginia 22230, USA

ABSTRACT: Investigations of community composition often rely on metrics based on the abundance of taxonomic groups to estimate biodiversity. Although traditional measures of biodiversity, such as richness and evenness, can be used in a comparative fashion to evaluate differences among communities in both temporal and spatial contexts, these measures generally omit a phylogenetic perspective of the evolutionary diversity represented in a community. Using Fast UniFrac, we examined ­PhyloChip data from 9 microbial communities throughout the Great Salt Lake, Utah, USA, for changes in phylogenetic distance. We found a significant correlation (p < 0.001) between the decreased community phylogenetic distance and increased salt concentration. Despite significant differences in composition, communities in locations with a similar salt concentration had a similar phylogenetic distance. This trend was confirmed by analyzing the biodiversity of 89 published microbial communities classified as extreme (n = 20) and non-extreme (n = 69). Although we found no significant statistical difference in traditional diversity estimates, such as Chao1 and abundance-based coverage estimate (ACE), between environments, the phylogenetic distance within extreme communities is significantly lower than in non-extreme communities. A smaller phylogenetic distance within more extreme communities may imply evolutionary conservatism and specialization.


KEY WORDS: Biodiversity · Hypersaline · Extremophile · Phylogenetic distance · Ecology


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Cite this article as: Parnell JJ, Rompato G, Crowl TA, Weimer BC, Pfrender ME (2011) Phylogenetic distance in Great Salt Lake microbial communities. Aquat Microb Ecol 64:267-273. https://doi.org/10.3354/ame01527

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